Variant report

Variant	rs6468809
Chromosome Location	chr8:103040256-103040257
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:103040180..103042383-chr8:103042773..103045419,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10089091	1.00[CEU][hapmap]
rs10090732	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10091084	0.85[EUR][1000 genomes]
rs10102923	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10105502	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs10505017	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12542663	0.80[EUR][1000 genomes]
rs1269711	1.00[CEU][hapmap];0.88[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1269712	0.98[EUR][1000 genomes]
rs16868893	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1992330	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs2023268	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2023269	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs2387331	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs28379664	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28680363	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34417909	0.82[EUR][1000 genomes]
rs4734049	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4734050	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4734052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4734607	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4734609	1.00[CEU][hapmap]
rs55837041	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs59321812	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60389438	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72679088	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7814225	0.85[EUR][1000 genomes]
rs7814951	1.00[CEU][hapmap]
rs7818772	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7837198	0.91[CEU][hapmap];0.88[CHB][hapmap]
rs9297317	0.91[CEU][hapmap];0.86[EUR][1000 genomes]
rs9656850	0.89[EUR][1000 genomes]
rs984928	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9886578	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv891235	chr8:103032394-103162638	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
7	nsv891236	chr8:103039917-103070301	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891237	chr8:103039917-103113701	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103030600-103045000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr8:103036000-103041400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:103036200-103041400	Weak transcription	Psoas Muscle	Psoas
4	chr8:103036200-103046800	Weak transcription	Left Ventricle	heart
5	chr8:103036400-103046400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr8:103036800-103041800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:103037000-103042000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:103037000-103042400	Weak transcription	Colon Smooth Muscle	Colon
9	chr8:103037000-103044000	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:103037400-103041800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr8:103037400-103046600	Weak transcription	Fetal Stomach	stomach
12	chr8:103037600-103041800	Weak transcription	Ovary	ovary
13	chr8:103037800-103041600	Weak transcription	Aorta	Aorta
14	chr8:103039400-103047200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:103039400-103050400	Weak transcription	Right Ventricle	heart
16	chr8:103040200-103046400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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