Variant report

Variant	rs72679088
Chromosome Location	chr8:103029373-103029374
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10090732	0.82[EUR][1000 genomes]
rs10091084	0.85[EUR][1000 genomes]
rs10102923	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10105502	0.82[EUR][1000 genomes]
rs10505017	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1269711	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1269712	0.95[EUR][1000 genomes]
rs16868893	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992330	0.81[EUR][1000 genomes]
rs2023268	0.85[EUR][1000 genomes]
rs2023269	0.85[EUR][1000 genomes]
rs2387331	0.85[EUR][1000 genomes]
rs28379664	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28680363	0.81[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34417909	0.82[EUR][1000 genomes]
rs4734049	0.80[AFR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734050	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4734052	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4734607	0.85[EUR][1000 genomes]
rs55837041	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59321812	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60389438	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6468809	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7814225	0.85[EUR][1000 genomes]
rs7818772	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297317	0.86[EUR][1000 genomes]
rs9656850	0.89[EUR][1000 genomes]
rs984928	0.85[EUR][1000 genomes]
rs9886578	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
5	nsv891234	chr8:103020391-103113701	Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103026400-103035200	Weak transcription	Left Ventricle	heart
2	chr8:103026400-103038800	Weak transcription	Right Ventricle	heart
3	chr8:103027800-103030400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:103028200-103030000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:103028800-103033000	Weak transcription	Ovary	ovary
6	chr8:103028800-103035000	Weak transcription	Aorta	Aorta
7	chr8:103028800-103036400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr8:103029000-103030200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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