Variant report

Variant	rs9656850
Chromosome Location	chr8:103016936-103016937
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10090732	0.86[EUR][1000 genomes]
rs10091084	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10102923	0.88[EUR][1000 genomes]
rs10105502	0.86[EUR][1000 genomes]
rs10505017	0.91[EUR][1000 genomes]
rs1269711	0.89[EUR][1000 genomes]
rs1269712	0.88[EUR][1000 genomes]
rs16868893	0.88[EUR][1000 genomes]
rs1992330	0.82[EUR][1000 genomes]
rs2023268	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2023269	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2387331	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28379664	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs28680363	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34417909	0.86[EUR][1000 genomes]
rs4734049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734050	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4734052	0.87[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs4734607	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55837041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59321812	0.88[EUR][1000 genomes]
rs60389438	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6468809	0.89[EUR][1000 genomes]
rs72679088	0.89[EUR][1000 genomes]
rs7814225	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7818772	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7819015	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9297317	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs984928	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9886578	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv891231	chr8:103001914-103076379	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv891232	chr8:103001914-103138045	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
4	nsv891233	chr8:103001914-103162638	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103010200-103028400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:103010400-103022800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:103010400-103027200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr8:103010800-103018800	Weak transcription	Left Ventricle	heart
5	chr8:103010800-103028400	Weak transcription	Aorta	Aorta
6	chr8:103012600-103024600	Weak transcription	Ovary	ovary
7	chr8:103013000-103024200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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