Variant report

Variant	rs10510470
Chromosome Location	chr3:17328679-17328680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:17327035..17329252-chr3:17332742..17334627,2	K562	blood:
2	chr3:17327752..17329716-chr3:17331813..17334242,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10510471	1.00[CEU][hapmap]
rs10510472	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10510476	1.00[CEU][hapmap]
rs17043177	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043261	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043269	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043281	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043318	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043327	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043333	1.00[AMR][1000 genomes]
rs17043349	1.00[AMR][1000 genomes]
rs17043352	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043358	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043365	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043366	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043377	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043398	1.00[AMR][1000 genomes]
rs17043404	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043406	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043457	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043520	1.00[CEU][hapmap]
rs17043521	1.00[CEU][hapmap]
rs17043523	1.00[CEU][hapmap]
rs17043525	1.00[CEU][hapmap]
rs17043527	1.00[CEU][hapmap]
rs17043529	1.00[CEU][hapmap]
rs17043556	1.00[CEU][hapmap]
rs17043562	1.00[CEU][hapmap]
rs17043615	1.00[CEU][hapmap]
rs17043634	1.00[CEU][hapmap]
rs17838675	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2100226	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41384544	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4579004	1.00[CEU][hapmap]
rs62245886	1.00[AMR][1000 genomes]
rs6795454	1.00[CEU][hapmap]
rs6804323	1.00[CEU][hapmap]
rs9873613	1.00[CEU][hapmap]
rs9985227	1.00[CEU][hapmap]
rs9985363	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv963495	chr3:17323835-17328802	Enhancers Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
2	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:17273600-17330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17279400-17330200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr3:17279800-17329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:17296600-17330200	Weak transcription	Left Ventricle	heart
7	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr3:17301400-17335400	Weak transcription	Ovary	ovary
9	chr3:17311000-17330400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:17313800-17332200	Weak transcription	Primary hematopoietic stem cells	blood
11	chr3:17315000-17332400	Weak transcription	GM12878-XiMat	blood
12	chr3:17315800-17330200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr3:17316200-17330200	Weak transcription	Fetal Intestine Large	intestine
14	chr3:17319600-17330200	Weak transcription	Dnd41	blood
15	chr3:17319600-17332400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:17319600-17332400	Weak transcription	Adipose Nuclei	Adipose
17	chr3:17319800-17328800	Weak transcription	HSMMtube	muscle
18	chr3:17319800-17330000	Weak transcription	Fetal Muscle Trunk	muscle
19	chr3:17319800-17351200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:17320400-17330200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:17320400-17330400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr3:17320600-17330200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr3:17320600-17330200	Weak transcription	Lung	lung
24	chr3:17320600-17330200	Weak transcription	Spleen	Spleen
25	chr3:17320600-17330400	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:17320800-17330400	Weak transcription	Stomach Smooth Muscle	stomach
27	chr3:17320800-17332200	Weak transcription	Colonic Mucosa	Colon
28	chr3:17321200-17332200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:17321400-17329800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:17321400-17330200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:17321600-17332200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:17321600-17354200	Weak transcription	Placenta	Placenta
33	chr3:17321800-17330200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:17321800-17332000	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr3:17322000-17330400	Weak transcription	Esophagus	oesophagus
36	chr3:17322000-17330400	Weak transcription	Pancreas	Pancrea
37	chr3:17322200-17342800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr3:17322600-17330200	Weak transcription	Fetal Stomach	stomach
39	chr3:17322600-17330200	Weak transcription	Gastric	stomach
40	chr3:17323000-17334600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr3:17323200-17329800	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr3:17323200-17330200	Weak transcription	Fetal Intestine Small	intestine
43	chr3:17323800-17330400	Weak transcription	Liver	Liver
44	chr3:17324600-17333000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr3:17325200-17330000	Weak transcription	Primary B cells from peripheral blood	blood
46	chr3:17325400-17329200	Weak transcription	Primary B cells from cord blood	blood
47	chr3:17325800-17330400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr3:17327400-17333000	Weak transcription	Duodenum Mucosa	Duodenum
49	chr3:17327600-17328800	Weak transcription	Psoas Muscle	Psoas
50	chr3:17327800-17343000	Weak transcription	Brain Inferior Temporal Lobe	brain

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