Variant report

Variant	rs17043365
Chromosome Location	chr3:17356057-17356058
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10510470	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10510471	1.00[CEU][hapmap]
rs10510472	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10510476	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17043177	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043261	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043269	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043281	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043318	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043327	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043333	1.00[AMR][1000 genomes]
rs17043349	1.00[AMR][1000 genomes]
rs17043352	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043358	1.00[AMR][1000 genomes]
rs17043366	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043377	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043398	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043404	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043406	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043457	1.00[CEU][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043520	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs17043521	1.00[CEU][hapmap]
rs17043523	1.00[CEU][hapmap]
rs17043525	1.00[CEU][hapmap]
rs17043527	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17043529	1.00[CEU][hapmap]
rs17043556	1.00[CEU][hapmap]
rs17043562	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17043615	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs17043634	1.00[CEU][hapmap]
rs17838675	1.00[AMR][1000 genomes]
rs2100226	1.00[AMR][1000 genomes]
rs4075644	0.88[AFR][1000 genomes]
rs41384544	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4579004	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs62245886	1.00[AMR][1000 genomes]
rs6795454	1.00[CEU][hapmap]
rs6804323	1.00[CEU][hapmap]
rs9873613	1.00[CEU][hapmap]
rs9985227	1.00[CEU][hapmap]
rs9985363	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:17330800-17381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17333000-17360400	Weak transcription	GM12878-XiMat	blood
5	chr3:17333400-17357400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:17333400-17357600	Weak transcription	Adipose Nuclei	Adipose
7	chr3:17333400-17363400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr3:17333400-17372000	Weak transcription	Liver	Liver
9	chr3:17333400-17376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
11	chr3:17340600-17362600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr3:17342600-17364400	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr3:17343200-17363600	Weak transcription	Primary T cells from cord blood	blood
14	chr3:17343400-17363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
16	chr3:17345800-17364000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:17347800-17364000	Weak transcription	Primary B cells from cord blood	blood
18	chr3:17349400-17364400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:17349600-17357800	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:17349600-17364000	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:17352000-17377600	Weak transcription	Dnd41	blood
22	chr3:17352200-17357400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:17352200-17370800	Weak transcription	Fetal Lung	lung
24	chr3:17354800-17381600	Weak transcription	Ovary	ovary
25	chr3:17355200-17356600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:17355400-17356200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr3:17355400-17356200	Enhancers	Left Ventricle	heart
28	chr3:17355600-17356400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr3:17355800-17357200	Weak transcription	K562	blood
30	chr3:17356000-17356200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
31	chr3:17356000-17356400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr3:17356000-17356400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links