Variant report

Variant	rs17043261
Chromosome Location	chr3:17299019-17299020
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10510470	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10510471	1.00[CEU][hapmap]
rs10510472	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs10510476	1.00[CEU][hapmap]
rs17043177	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17043269	1.00[CEU][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes]
rs17043281	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043318	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043327	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043333	1.00[AMR][1000 genomes]
rs17043349	1.00[AMR][1000 genomes]
rs17043352	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043358	1.00[AMR][1000 genomes]
rs17043365	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043366	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043377	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043398	1.00[AMR][1000 genomes]
rs17043404	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043406	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043457	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17043520	1.00[CEU][hapmap]
rs17043521	1.00[CEU][hapmap]
rs17043523	1.00[CEU][hapmap]
rs17043525	1.00[CEU][hapmap]
rs17043527	1.00[CEU][hapmap]
rs17043529	1.00[CEU][hapmap]
rs17043556	1.00[CEU][hapmap]
rs17043562	1.00[CEU][hapmap]
rs17043615	1.00[CEU][hapmap]
rs17043634	1.00[CEU][hapmap]
rs17838675	1.00[AMR][1000 genomes]
rs2100226	1.00[AMR][1000 genomes]
rs41384544	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs4579004	1.00[CEU][hapmap]
rs62245886	1.00[AMR][1000 genomes]
rs6795454	1.00[CEU][hapmap]
rs9873613	1.00[CEU][hapmap]
rs9985227	1.00[CEU][hapmap]
rs9985363	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876589	chr3:17230884-17346355	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17250000-17330200	Weak transcription	Aorta	Aorta
2	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:17263200-17307200	Weak transcription	Fetal Intestine Small	intestine
4	chr3:17273600-17330200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr3:17277600-17328600	Weak transcription	Primary T cells from cord blood	blood
6	chr3:17279400-17330200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr3:17279800-17299800	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr3:17279800-17329600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:17280000-17299200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr3:17280000-17300400	Weak transcription	Dnd41	blood
11	chr3:17280400-17302400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr3:17290000-17301600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr3:17290200-17301400	Weak transcription	NHDF-Ad	bronchial
14	chr3:17291800-17311000	Weak transcription	Primary B cells from cord blood	blood
15	chr3:17293000-17306200	Weak transcription	Right Ventricle	heart
16	chr3:17296600-17330200	Weak transcription	Left Ventricle	heart
17	chr3:17297600-17301200	Weak transcription	Fetal Heart	heart
18	chr3:17298200-17299600	Enhancers	Liver	Liver
19	chr3:17298800-17299600	Strong transcription	Primary hematopoietic stem cells	blood
20	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:17299000-17299400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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