Variant report

Variant	rs9873613
Chromosome Location	chr3:17216763-17216764
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10510470	1.00[CEU][hapmap]
rs10510471	1.00[CEU][hapmap]
rs10510472	1.00[CEU][hapmap]
rs17043177	1.00[CEU][hapmap]
rs17043261	1.00[CEU][hapmap]
rs17043269	1.00[CEU][hapmap]
rs17043281	1.00[CEU][hapmap]
rs17043318	1.00[CEU][hapmap]
rs17043327	1.00[CEU][hapmap]
rs17043352	1.00[CEU][hapmap]
rs17043365	1.00[CEU][hapmap]
rs17043366	1.00[CEU][hapmap]
rs17043377	1.00[CEU][hapmap]
rs17043404	1.00[CEU][hapmap]
rs17043406	1.00[CEU][hapmap]
rs17043457	1.00[CEU][hapmap]
rs41384544	1.00[CEU][hapmap]
rs9985227	1.00[CEU][hapmap]
rs9985363	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv589841	chr3:17214070-17290465	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv876588	chr3:17214070-17314872	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17191400-17217600	Weak transcription	Small Intestine	intestine
2	chr3:17195000-17224200	Weak transcription	Fetal Kidney	kidney
3	chr3:17195200-17223000	Weak transcription	Fetal Brain Female	brain
4	chr3:17195800-17219000	Strong transcription	Primary B cells from peripheral blood	blood
5	chr3:17198400-17225200	Weak transcription	HMEC	breast
6	chr3:17200200-17216800	Weak transcription	HSMMtube	muscle
7	chr3:17200800-17225600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:17201000-17220400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:17201200-17236200	Weak transcription	Fetal Brain Male	brain
10	chr3:17202400-17217200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:17202800-17217400	Weak transcription	HUVEC	blood vessel
12	chr3:17203200-17224400	Weak transcription	A549	lung
13	chr3:17203800-17217200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr3:17203800-17244200	Weak transcription	Colonic Mucosa	Colon
15	chr3:17204400-17221200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr3:17208000-17223600	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr3:17208200-17217200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr3:17208200-17244000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr3:17208400-17217200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:17208400-17221000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:17208400-17221000	Weak transcription	Brain Anterior Caudate	brain
22	chr3:17208400-17223600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:17208400-17224400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:17208400-17228600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:17208400-17243800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr3:17208400-17244000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr3:17208600-17221000	Weak transcription	Fetal Thymus	thymus
28	chr3:17208600-17224600	Weak transcription	HepG2	liver
29	chr3:17208800-17234400	Weak transcription	Brain Angular Gyrus	brain
30	chr3:17209000-17216800	Weak transcription	NHEK	skin
31	chr3:17209000-17221000	Weak transcription	Primary T cells fromperipheralblood	blood
32	chr3:17209000-17221000	Weak transcription	GM12878-XiMat	blood
33	chr3:17209000-17234000	Weak transcription	Brain Substantia Nigra	brain
34	chr3:17209200-17216800	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:17209200-17216800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr3:17209200-17217000	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr3:17209200-17220200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr3:17209200-17221000	Weak transcription	Thymus	Thymus
39	chr3:17209200-17224400	Weak transcription	Placenta	Placenta
40	chr3:17209200-17224800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:17209200-17225000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:17209200-17225600	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr3:17209400-17224600	Weak transcription	Fetal Lung	lung
44	chr3:17209600-17217200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr3:17209600-17217200	Weak transcription	Left Ventricle	heart
46	chr3:17209600-17220400	Weak transcription	Primary monocytes fromperipheralblood	blood
47	chr3:17209600-17220400	Weak transcription	Dnd41	blood
48	chr3:17209600-17223000	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr3:17209600-17224400	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr3:17209600-17224400	Weak transcription	Liver	Liver

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