Variant report

Variant	rs10510547
Chromosome Location	chr3:24666297-24666298
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10433572	0.82[ASN][1000 genomes]
rs11920351	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17014989	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17014995	0.82[ASN][1000 genomes]
rs57192132	0.81[ASN][1000 genomes]
rs59450278	0.81[ASN][1000 genomes]
rs6792910	0.83[ASN][1000 genomes]
rs73143121	0.90[ASN][1000 genomes]
rs7614222	0.90[ASN][1000 genomes]
rs7621980	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7623669	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7627134	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7630647	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9817350	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24658800-24667000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24663800-24666400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr3:24666200-24667200	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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