Variant report

Variant	rs7623669
Chromosome Location	chr3:24680832-24680833
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10433572	0.86[ASN][1000 genomes]
rs10510547	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11920351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17014989	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17014995	0.94[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs2082902	0.84[EUR][1000 genomes]
rs57192132	0.86[ASN][1000 genomes]
rs59450278	0.87[ASN][1000 genomes]
rs6792910	0.85[ASN][1000 genomes]
rs73143121	0.85[ASN][1000 genomes]
rs7614222	1.00[ASN][1000 genomes]
rs7621980	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7627134	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7630647	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs920117	0.84[EUR][1000 genomes]
rs9637523	0.86[EUR][1000 genomes]
rs9817350	0.95[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs9847484	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24680000-24681800	Enhancers	Fetal Intestine Large	intestine
2	chr3:24680400-24681800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr3:24680400-24683400	Enhancers	Adipose Nuclei	Adipose
4	chr3:24680400-24683600	Enhancers	Fetal Intestine Small	intestine
5	chr3:24680600-24681600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:24680800-24681000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:24680800-24681800	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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