Variant report
| Variant | rs7630647 |
|---|---|
| Chromosome Location | chr3:24680131-24680132 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151090 | Chromatin interaction |
| ENSG00000228791 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10433572 | 0.86[ASN][1000 genomes] |
| rs10510547 | 0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11920351 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17014989 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17014995 | 0.89[CHB][hapmap];0.83[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2082902 | 0.84[EUR][1000 genomes] |
| rs57192132 | 0.85[ASN][1000 genomes] |
| rs59450278 | 0.86[ASN][1000 genomes] |
| rs6792910 | 0.85[ASN][1000 genomes] |
| rs73143121 | 0.88[ASN][1000 genomes] |
| rs7614222 | 0.97[ASN][1000 genomes] |
| rs7621980 | 0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs7623669 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7627134 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs920117 | 0.84[EUR][1000 genomes] |
| rs9637523 | 0.86[EUR][1000 genomes] |
| rs9817350 | 0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs9847484 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757862 | chr3:24652513-24942926 | Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | esv2759135 | chr3:24652513-24942926 | Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:24680000-24681800 | Enhancers | Fetal Intestine Large | intestine |
