Variant report

Variant	rs7614222
Chromosome Location	chr3:24683911-24683912
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10433572	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10510547	0.90[ASN][1000 genomes]
rs11920351	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17014989	1.00[ASN][1000 genomes]
rs17014995	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57192132	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59450278	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6792910	0.85[ASN][1000 genomes]
rs73143121	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7621980	0.99[ASN][1000 genomes]
rs7623669	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs7627134	0.99[ASN][1000 genomes]
rs7630647	0.95[CHB][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs9817350	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9847484	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24683000-24684000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:24683400-24684200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr3:24683400-24684200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:24683400-24684400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:24683600-24684200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:24683600-24694800	Weak transcription	Fetal Intestine Small	intestine
7	chr3:24683800-24684200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr3:24683800-24684200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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