Variant report

Variant	rs6792910
Chromosome Location	chr3:24689933-24689934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10433572	0.99[ASN][1000 genomes]
rs10510547	0.83[ASN][1000 genomes]
rs11920351	0.86[ASN][1000 genomes]
rs17014989	0.85[ASN][1000 genomes]
rs17014995	0.98[ASN][1000 genomes]
rs57192132	0.98[ASN][1000 genomes]
rs59450278	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs73143121	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7614222	0.85[ASN][1000 genomes]
rs7621980	0.86[ASN][1000 genomes]
rs7623669	0.85[ASN][1000 genomes]
rs7627134	0.86[ASN][1000 genomes]
rs7630647	0.85[ASN][1000 genomes]
rs9817350	0.88[ASN][1000 genomes]
rs9834142	0.87[AFR][1000 genomes]
rs9847484	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757862	chr3:24652513-24942926	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759135	chr3:24652513-24942926	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24683600-24694800	Weak transcription	Fetal Intestine Small	intestine
2	chr3:24688800-24690000	Enhancers	Colon Smooth Muscle	Colon
3	chr3:24689600-24690200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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