Variant report

Variant	rs10512124
Chromosome Location	chr9:84950712-84950713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10114842	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124501	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001555	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003554	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337518	1.00[CHB][hapmap];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344662	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1571634	1.00[CHB][hapmap]
rs17300062	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300413	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58724148	1.00[ASN][1000 genomes]
rs72731019	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731034	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731036	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731038	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731039	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737415	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737417	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728967	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728968	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84949400-84963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:84949600-84953600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr9:84949600-84953600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr9:84949800-84953600	Weak transcription	Osteobl	bone
5	chr9:84950000-84954000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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