Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10124501	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124506	0.80[AFR][1000 genomes]
rs10512124	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001555	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003554	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337518	1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344662	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345426	1.00[YRI][hapmap]
rs12348256	0.80[AFR][1000 genomes]
rs1571634	1.00[CHB][hapmap]
rs17300062	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300413	0.85[EUR][1000 genomes]
rs28710431	0.80[AFR][1000 genomes]
rs58724148	1.00[ASN][1000 genomes]
rs60491272	0.80[AFR][1000 genomes]
rs72731019	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731034	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731036	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731038	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731039	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737415	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737417	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728967	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728968	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84976600-84981200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:84980200-84981200	Weak transcription	HSMMtube	muscle
3	chr9:84980600-84982600	Enhancers	Fetal Kidney	kidney
4	chr9:84980800-84981600	Enhancers	HSMM	muscle
5	chr9:84980800-84982200	Enhancers	Fetal Muscle Leg	muscle
6	chr9:84980800-84983000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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