Variant report

Variant	rs12345426
Chromosome Location	chr9:84884313-84884314
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10118896	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10124506	0.85[AFR][1000 genomes]
rs10125973	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139542	0.89[AFR][1000 genomes]
rs12337518	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12344580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346697	0.96[AFR][1000 genomes]
rs12348256	0.85[AFR][1000 genomes]
rs12348457	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710431	0.85[AFR][1000 genomes]
rs57241448	0.82[AFR][1000 genomes]
rs60491272	0.85[AFR][1000 genomes]
rs7849774	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84879000-84887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:84881400-84889000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:84884000-84884400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links