Variant report

Variant	rs11139542
Chromosome Location	chr9:84949499-84949500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10118896	0.91[AFR][1000 genomes]
rs10124506	0.96[AFR][1000 genomes]
rs10125973	0.89[AFR][1000 genomes]
rs12337518	1.00[YRI][hapmap]
rs12344580	0.91[AFR][1000 genomes]
rs12345426	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12346697	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348256	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12348457	0.91[AFR][1000 genomes]
rs2378632	1.00[AMR][1000 genomes]
rs28710431	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57241448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60491272	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7849774	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84945800-84949800	Enhancers	NHDF-Ad	bronchial
2	chr9:84946000-84949600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:84946000-84950000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:84946200-84949600	Enhancers	NHEK	skin
5	chr9:84946400-84949600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr9:84946400-84950000	Enhancers	HMEC	breast
7	chr9:84947400-84949800	Enhancers	Osteobl	bone
8	chr9:84947600-84949600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:84947800-84949600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:84949000-84949800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:84949400-84963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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