Variant report

Variant	rs12344580
Chromosome Location	chr9:84818402-84818403
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10118896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10124506	0.87[AFR][1000 genomes]
rs10125973	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11139542	0.91[AFR][1000 genomes]
rs12337518	1.00[YRI][hapmap]
rs12345426	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12346697	0.91[AFR][1000 genomes]
rs12348256	0.87[AFR][1000 genomes]
rs12348457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28710431	0.87[AFR][1000 genomes]
rs57241448	0.84[AFR][1000 genomes]
rs60491272	0.87[AFR][1000 genomes]
rs7849774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84812600-84821200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:84816000-84821200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:84817800-84818600	Enhancers	HMEC	breast
4	chr9:84818000-84818600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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