Variant report

Variant	rs10124506
Chromosome Location	chr9:84957269-84957270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10114842	0.80[AFR][1000 genomes]
rs10118896	0.87[AFR][1000 genomes]
rs10125973	0.85[AFR][1000 genomes]
rs11139542	0.96[AFR][1000 genomes]
rs12344580	0.87[AFR][1000 genomes]
rs12345426	0.85[AFR][1000 genomes]
rs12346697	0.89[AFR][1000 genomes]
rs12348256	1.00[AFR][1000 genomes]
rs12348457	0.87[AFR][1000 genomes]
rs28710431	1.00[AFR][1000 genomes]
rs57241448	0.96[AFR][1000 genomes]
rs60491272	1.00[AFR][1000 genomes]
rs7849774	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893508	chr9:84954592-85080395	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv893509	chr9:84954592-85097651	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893510	chr9:84954592-85117420	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84949400-84963800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:84955600-84957800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:84956800-84957600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr9:84957000-84957400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr9:84957200-84957400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:84957200-84961200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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