Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:84884950-84885283	IMR90	lung:	n/a	chr9:84885116-84885127 chr9:84885115-84885126
2	CEBPB	chr9:84884963-84885287	HepG2	liver:	n/a	chr9:84885116-84885127 chr9:84885115-84885126

Variant related genes	Relation type
ENSG00000228430	TF binding region

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10114842	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124501	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512124	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12001555	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003554	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344662	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345426	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1571634	1.00[CHB][hapmap]
rs17300062	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300413	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58724148	1.00[ASN][1000 genomes]
rs72731019	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731034	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731036	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731038	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731039	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737415	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737417	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728967	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728968	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84879000-84887400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr9:84881400-84889000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:84884800-84888800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:84884800-84890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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