Variant report

Variant	rs17300413
Chromosome Location	chr9:84806341-84806342
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10114842	0.85[EUR][1000 genomes]
rs10124501	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10512124	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12001555	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12003554	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12337518	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12344662	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17300062	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72731019	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72731034	0.85[EUR][1000 genomes]
rs72731036	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72731038	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72731039	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72737415	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72737417	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs728967	0.92[EUR][1000 genomes]
rs728968	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv893507	chr9:84799537-85097651	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84805200-84807800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr9:84805800-84807400	Enhancers	Primary hematopoietic stem cells	blood
3	chr9:84805800-84808000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:84806200-84806600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:84806200-84806800	Enhancers	Primary B cells from cord blood	blood
6	chr9:84806200-84807400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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