Variant report

Variant	rs728968
Chromosome Location	chr9:84786050-84786051
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10114842	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124501	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512124	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139470	0.87[YRI][hapmap]
rs12001555	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12003554	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337518	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344662	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300062	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17300413	0.92[EUR][1000 genomes]
rs58724148	1.00[ASN][1000 genomes]
rs72731019	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731034	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731036	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731038	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72731039	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737415	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737417	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs728967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049305	chr9:84667596-84918690	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831640	chr9:84695958-84880535	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:84783600-84786600	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr9:84784800-84786400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr9:84784800-84786600	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr9:84784800-84786600	Enhancers	NHDF-Ad	bronchial
5	chr9:84785000-84786200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr9:84785000-84786400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:84785000-84786600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr9:84785200-84786400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:84785200-84786600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:84785400-84786400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:84785400-84786400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:84785800-84786200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:84785800-84786400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:84785800-84787800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr9:84786000-84788200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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