Variant report

Variant	rs10513234
Chromosome Location	chr3:143670957-143670958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:143604467..143605336-chr3:143669926..143671031,5	MCF-7	breast:
2	chr3:143665083..143667441-chr3:143670165..143673071,2	K562	blood:
3	chr3:143614737..143615277-chr3:143670652..143671460,2	MCF-7	breast:
4	chr3:143669131..143673434-chr3:143689474..143692408,5	MCF-7	breast:
5	chr3:143668700..143672507-chr3:143690640..143693277,4	K562	blood:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1025984	0.95[CEU][hapmap]
rs10513235	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[LWK][hapmap];0.98[MKK][hapmap];0.94[YRI][hapmap]
rs13064130	0.84[ASN][1000 genomes]
rs13078840	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[LWK][hapmap];0.98[MKK][hapmap];0.94[YRI][hapmap]
rs13081286	0.95[CEU][hapmap]
rs13086088	0.95[CEU][hapmap]
rs1466941	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17602500	0.94[CHB][hapmap];0.90[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17667256	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs1979910	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1992093	0.94[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2279856	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2885197	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34038325	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34071449	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34402874	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35072578	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35211123	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35362423	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35692092	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35716467	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4315684	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4446205	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535221	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563409	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59287916	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60505453	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62267390	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6440210	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6768153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs721572	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs723491	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7610378	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7634145	0.95[CEU][hapmap]
rs7637912	0.95[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3365190	chr3:143642195-143925886	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv591922	chr3:143645242-143825439	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv518814	chr3:143666825-143703750	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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