Variant report

Variant	rs2885197
Chromosome Location	chr3:143636616-143636617
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1025984	0.91[CEU][hapmap];0.90[GIH][hapmap]
rs10513234	0.95[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10513235	0.91[CEU][hapmap];0.82[CHB][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs13068298	0.96[GIH][hapmap];0.80[MEX][hapmap]
rs13078840	0.91[CEU][hapmap];0.82[CHB][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs13081286	0.91[CEU][hapmap]
rs13086088	0.91[CEU][hapmap]
rs1466941	0.95[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17602500	0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs17667256	0.82[CHB][hapmap]
rs1979910	0.91[CEU][hapmap];0.82[CHB][hapmap];0.82[GIH][hapmap];0.85[JPT][hapmap]
rs1992093	0.80[JPT][hapmap];0.81[ASN][1000 genomes]
rs2279856	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs34038325	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34071449	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34402874	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35072578	0.86[ASN][1000 genomes]
rs35211123	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35362423	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35692092	0.81[ASN][1000 genomes]
rs35716467	0.82[ASN][1000 genomes]
rs4315684	0.86[ASN][1000 genomes]
rs4446205	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4535221	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4563409	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59287916	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60505453	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62267390	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6440210	0.91[CEU][hapmap];0.82[CHB][hapmap];0.90[GIH][hapmap];0.81[JPT][hapmap]
rs6767236	0.96[GIH][hapmap];0.86[MEX][hapmap]
rs6768153	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6804060	0.81[GIH][hapmap]
rs721572	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs723491	0.81[ASN][1000 genomes]
rs7610378	0.91[CEU][hapmap];0.82[CHB][hapmap];0.86[GIH][hapmap];0.81[JPT][hapmap]
rs7634145	0.91[CEU][hapmap]
rs7637912	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143629800-143640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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