Variant report
| Variant | rs34071449 |
|---|---|
| Chromosome Location | chr3:143662861-143662862 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:143662718..143664731-chr3:143690869..143693608,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000181744 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10513234 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13064130 | 0.85[ASN][1000 genomes] |
| rs1466941 | 0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs17602500 | 0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1992093 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2279856 | 0.87[ASN][1000 genomes] |
| rs2885197 | 0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs34038325 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs34402874 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs35072578 | 0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35211123 | 0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs35362423 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs35692092 | 0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs35716467 | 0.94[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4315684 | 0.83[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs4446205 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4535221 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4563409 | 0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs59287916 | 0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs60505453 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs62267390 | 0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6768153 | 0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs723491 | 0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877568 | chr3:143621140-143992630 | Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | esv3365190 | chr3:143642195-143925886 | Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 33 gene(s) | inside rSNPs | diseases |
| 3 | nsv591922 | chr3:143645242-143825439 | Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
