Variant report

Variant	rs59287916
Chromosome Location	chr3:143638337-143638338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10513234	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13064130	0.85[ASN][1000 genomes]
rs1466941	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17602500	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1992093	0.88[ASN][1000 genomes]
rs2279856	0.86[ASN][1000 genomes]
rs2885197	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34038325	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34071449	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34402874	0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35072578	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35211123	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35362423	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35692092	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35716467	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4315684	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4446205	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4535221	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4563409	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60505453	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62267390	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6768153	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs723491	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877568	chr3:143621140-143992630	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143629800-143640400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:143637800-143647000	Enhancers	Primary B cells from peripheral blood	blood
3	chr3:143638000-143638400	Enhancers	Fetal Thymus	thymus
4	chr3:143638000-143639200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:143638200-143639000	Enhancers	H1 Cell Line	embryonic stem cell

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