Variant report

Variant	rs10516461
Chromosome Location	chr4:101069386-101069387
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11097687	0.84[EUR][1000 genomes]
rs11723477	0.90[EUR][1000 genomes]
rs11732182	0.90[EUR][1000 genomes]
rs11735694	0.93[EUR][1000 genomes]
rs11736719	0.92[EUR][1000 genomes]
rs11932845	0.92[EUR][1000 genomes]
rs11935767	0.89[EUR][1000 genomes]
rs11937848	0.84[EUR][1000 genomes]
rs11940617	0.92[EUR][1000 genomes]
rs11942532	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs11944693	0.88[EUR][1000 genomes]
rs11947412	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs2866197	0.85[MEX][hapmap]
rs36109329	0.84[EUR][1000 genomes]
rs4343735	0.82[EUR][1000 genomes]
rs4492010	0.84[EUR][1000 genomes]
rs56159765	0.84[EUR][1000 genomes]
rs56311063	0.82[EUR][1000 genomes]
rs57253200	0.88[EUR][1000 genomes]
rs57315614	0.84[EUR][1000 genomes]
rs58385517	0.84[EUR][1000 genomes]
rs60524451	0.88[EUR][1000 genomes]
rs61351569	0.84[EUR][1000 genomes]
rs6532841	0.84[EUR][1000 genomes]
rs66686535	0.93[EUR][1000 genomes]
rs66775689	0.91[EUR][1000 genomes]
rs66903712	0.84[EUR][1000 genomes]
rs67560461	0.93[EUR][1000 genomes]
rs67594720	0.84[EUR][1000 genomes]
rs67973788	0.93[EUR][1000 genomes]
rs6813794	0.84[EUR][1000 genomes]
rs6825579	0.84[EUR][1000 genomes]
rs6834448	0.88[EUR][1000 genomes]
rs6834813	0.88[EUR][1000 genomes]
rs6836304	0.83[EUR][1000 genomes]
rs6839278	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs6858035	0.88[EUR][1000 genomes]
rs72686282	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7340772	0.83[EUR][1000 genomes]
rs7660479	0.84[EUR][1000 genomes]
rs7662195	0.84[EUR][1000 genomes]
rs7665301	0.83[EUR][1000 genomes]
rs7676597	0.84[EUR][1000 genomes]
rs7687287	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs9942267	0.88[EUR][1000 genomes]
rs9942269	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs10516461	MAPKSP1	cis	parietal	SCAN
rs10516461	MAPKSP1	cis	cerebellum	SCAN
rs10516461	ADH6	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101066800-101069600	Weak transcription	Aorta	Aorta
2	chr4:101067400-101070200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links