Variant report

Variant	rs11932845
Chromosome Location	chr4:101018017-101018018
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:100869287..100871167-chr4:101016882..101019433,2	K562	blood:

Variant related genes	Relation type
ENSG00000245322	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10516461	0.92[EUR][1000 genomes]
rs11097687	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11723477	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735694	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736719	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935767	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11937848	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11940617	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942532	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944693	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947412	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36109329	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4343735	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4492010	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159765	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56311063	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57253200	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57315614	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58385517	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60524451	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61351569	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532841	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532842	0.94[ASN][1000 genomes]
rs66686535	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66775689	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66903712	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67560461	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67594720	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67973788	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813794	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825579	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6830286	0.94[ASN][1000 genomes]
rs6834448	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6834813	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836304	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6839278	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842492	0.97[ASN][1000 genomes]
rs6858035	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7340772	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7340886	0.94[ASN][1000 genomes]
rs7660479	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7662195	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7665301	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7668076	0.94[ASN][1000 genomes]
rs7676597	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7687287	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942267	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942269	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101014600-101019800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:101015200-101019000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:101015200-101020600	Weak transcription	Fetal Intestine Large	intestine
5	chr4:101015200-101021600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr4:101015200-101022200	Weak transcription	Fetal Thymus	thymus
7	chr4:101015400-101020800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr4:101015400-101021800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr4:101015400-101022000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr4:101015600-101022200	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr4:101017000-101018200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:101017000-101018200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr4:101017200-101018200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:101017200-101018400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:101017200-101021800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr4:101017400-101022000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr4:101017400-101022400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr4:101017600-101019200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:101017600-101019400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr4:101017600-101021400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:101017800-101019400	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr4:101017800-101021400	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr4:101017800-101021800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr4:101017800-101022000	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr4:101017800-101022000	Weak transcription	Dnd41	blood
26	chr4:101017800-101022200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr4:101018000-101019200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:101018000-101020000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr4:101018000-101022200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links