Variant report

Variant	rs66686535
Chromosome Location	chr4:101037327-101037328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10516461	0.93[EUR][1000 genomes]
rs11097687	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11723477	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11732182	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11735694	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11736719	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11932845	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11935767	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11937848	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11940617	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11942532	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11944693	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11947412	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36109329	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4343735	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4492010	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56159765	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56311063	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57253200	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57315614	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58385517	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60524451	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61351569	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532841	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6532842	0.94[ASN][1000 genomes]
rs66775689	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66903712	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67560461	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67594720	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67973788	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6813794	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6825579	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6830286	0.94[ASN][1000 genomes]
rs6834448	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6834813	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6836304	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6839278	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6842492	0.97[ASN][1000 genomes]
rs6858035	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7340772	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7340886	0.94[ASN][1000 genomes]
rs7660479	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7662195	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7665301	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7668076	0.94[ASN][1000 genomes]
rs7676597	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7687287	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942267	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9942269	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830019	chr4:101023666-101208908	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101034200-101037400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:101034200-101037800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr4:101035800-101037600	Enhancers	Fetal Kidney	kidney
4	chr4:101036800-101037400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr4:101037000-101037600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:101037200-101037400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr4:101037200-101037400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
8	chr4:101037200-101037600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
9	chr4:101037200-101039800	Weak transcription	H9 Cell Line	embryonic stem cell

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