Variant report

Variant	rs9942269
Chromosome Location	chr4:101014101-101014102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101013911..101015173-chr4:101231169..101232872,9	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10516461	0.88[EUR][1000 genomes]
rs11097687	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11723477	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11732182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11735694	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11736719	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11932845	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11935767	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11937848	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11940617	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11942532	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11944693	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11947412	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs36109329	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4343735	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4492010	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56159765	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56311063	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57253200	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57315614	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58385517	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60524451	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61351569	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532841	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6532842	0.95[ASN][1000 genomes]
rs66686535	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66775689	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66903712	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67560461	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67594720	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67973788	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6813794	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6825579	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6830286	0.95[ASN][1000 genomes]
rs6834448	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6834813	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6836304	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6839278	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6842492	0.99[ASN][1000 genomes]
rs6858035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7340772	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7340886	0.95[ASN][1000 genomes]
rs7660479	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7662195	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7665301	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7668076	0.95[ASN][1000 genomes]
rs7676597	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7687287	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9942267	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101008600-101014200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:101008600-101017800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:101008800-101014200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr4:101008800-101014200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:101008800-101014200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr4:101009000-101014400	Weak transcription	NHEK	skin
8	chr4:101009200-101014400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:101009200-101017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:101009600-101014400	Weak transcription	Adipose Nuclei	Adipose
11	chr4:101009800-101014400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:101009800-101014400	Weak transcription	Fetal Lung	lung
13	chr4:101009800-101014800	Weak transcription	Placenta	Placenta
14	chr4:101010200-101014200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:101010200-101014400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:101013400-101015200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr4:101013400-101016800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr4:101013600-101015800	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:101013600-101017000	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:101013800-101015000	Enhancers	Fetal Stomach	stomach
21	chr4:101013800-101015200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr4:101013800-101015200	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:101014000-101014600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:101014000-101015200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr4:101014000-101015400	Enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr4:101014000-101016000	Enhancers	Colon Smooth Muscle	Colon

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