Variant report

Variant	rs11935767
Chromosome Location	chr4:101014809-101014810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101013911..101015173-chr4:101231169..101232872,9	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10516461	0.89[EUR][1000 genomes]
rs11097687	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11723477	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11732182	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11735694	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11736719	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11932845	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11937848	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11940617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11942532	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11944693	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11947412	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs36109329	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4343735	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4492010	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56159765	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56311063	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57253200	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57315614	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58385517	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60524451	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61351569	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6532841	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6532842	0.89[ASN][1000 genomes]
rs66686535	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66775689	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66903712	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67560461	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67594720	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67973788	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6813794	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6825579	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6830286	0.89[ASN][1000 genomes]
rs6834448	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6834813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6836304	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6839278	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6842492	0.93[ASN][1000 genomes]
rs6858035	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7340772	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7340886	0.89[ASN][1000 genomes]
rs7660479	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7662195	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7665301	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7668076	0.89[ASN][1000 genomes]
rs7676597	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7687287	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9942267	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9942269	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427689	chr4:100931741-101216531	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv830018	chr4:100977238-101027920	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101007800-101028000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:101008600-101017800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:101009200-101017600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:101013400-101015200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr4:101013400-101016800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:101013600-101015800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:101013600-101017000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr4:101013800-101015000	Enhancers	Fetal Stomach	stomach
9	chr4:101013800-101015200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr4:101013800-101015200	Enhancers	Rectal Smooth Muscle	rectum
11	chr4:101014000-101015200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:101014000-101015400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:101014000-101016000	Enhancers	Colon Smooth Muscle	Colon
14	chr4:101014200-101015000	Enhancers	Fetal Kidney	kidney
15	chr4:101014200-101015200	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:101014200-101015200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr4:101014200-101015200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr4:101014200-101015200	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr4:101014200-101015200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr4:101014200-101015200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:101014200-101015200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr4:101014200-101015400	Enhancers	Dnd41	blood
23	chr4:101014200-101015600	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr4:101014200-101015800	Enhancers	Primary T helper cells PMA-I stimulated	--
25	chr4:101014200-101016800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:101014200-101017400	Enhancers	Skeletal Muscle Male	skeletal muscle
27	chr4:101014400-101015000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:101014400-101015000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:101014400-101015000	Enhancers	Left Ventricle	heart
30	chr4:101014400-101015000	Enhancers	Osteobl	bone
31	chr4:101014400-101015200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr4:101014400-101015200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:101014400-101015200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr4:101014400-101015200	Enhancers	Primary B cells from cord blood	blood
35	chr4:101014400-101015200	Enhancers	Primary B cells from peripheral blood	blood
36	chr4:101014400-101015200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr4:101014400-101015200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr4:101014400-101015200	Enhancers	Adipose Nuclei	Adipose
39	chr4:101014400-101015200	Enhancers	Brain Anterior Caudate	brain
40	chr4:101014400-101015200	Enhancers	Fetal Intestine Large	intestine
41	chr4:101014400-101015200	Enhancers	Fetal Thymus	thymus
42	chr4:101014400-101015200	Enhancers	Stomach Smooth Muscle	stomach
43	chr4:101014400-101015200	Enhancers	NHEK	skin
44	chr4:101014400-101015400	Enhancers	Primary T cells from cord blood	blood
45	chr4:101014400-101015400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr4:101014400-101015400	Enhancers	Fetal Lung	lung
47	chr4:101014400-101015400	Enhancers	Hela-S3	cervix
48	chr4:101014400-101015600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:101014400-101015800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:101014400-101018000	Enhancers	Skeletal Muscle Female	skeletal muscle

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