Variant report

Variant	rs10519962
Chromosome Location	chr4:149294100-149294101
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1355612	0.85[AFR][1000 genomes]
rs17024556	1.00[MEX][hapmap]
rs17024607	1.00[AMR][1000 genomes]
rs17024702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1858415	1.00[AMR][1000 genomes]
rs3910060	1.00[AMR][1000 genomes]
rs72645698	1.00[AMR][1000 genomes]
rs72655224	1.00[AMR][1000 genomes]
rs72656806	1.00[AMR][1000 genomes]
rs72656849	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72656898	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72658613	1.00[AMR][1000 genomes]
rs878232	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs907619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv880246	chr4:149287807-149311728	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149277000-149296800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:149277000-149306800	Weak transcription	Pancreas	Pancrea
3	chr4:149281200-149300800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr4:149282800-149296800	Weak transcription	Psoas Muscle	Psoas
5	chr4:149283000-149299000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:149288400-149297000	Weak transcription	Fetal Heart	heart
7	chr4:149289400-149294200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:149289400-149294200	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149289600-149294200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr4:149289600-149297000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr4:149290200-149297200	Weak transcription	Aorta	Aorta
12	chr4:149290400-149296800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:149291200-149296800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr4:149291400-149297000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr4:149291400-149297200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr4:149291600-149296800	Weak transcription	HepG2	liver
17	chr4:149292000-149296600	Weak transcription	HUVEC	blood vessel
18	chr4:149292200-149298600	Weak transcription	Left Ventricle	heart
19	chr4:149292200-149315000	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:149293400-149295400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr4:149294000-149294200	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr4:149294000-149294800	Enhancers	Right Atrium	heart

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