Variant report

Variant	rs17024702
Chromosome Location	chr4:149333485-149333486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519962	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1355612	0.81[AFR][1000 genomes]
rs17024607	1.00[AMR][1000 genomes]
rs1858415	1.00[AMR][1000 genomes]
rs3910060	1.00[AMR][1000 genomes]
rs72645698	1.00[AMR][1000 genomes]
rs72655224	1.00[AMR][1000 genomes]
rs72656806	1.00[AMR][1000 genomes]
rs72656849	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72656898	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72658613	1.00[AMR][1000 genomes]
rs878232	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs907619	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
3	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:149318800-149346600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr4:149319000-149339000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr4:149319200-149335000	Weak transcription	Esophagus	oesophagus
7	chr4:149319200-149339200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:149319400-149334600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:149320400-149351800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:149325800-149338600	Weak transcription	Brain Angular Gyrus	brain
11	chr4:149326800-149334600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr4:149327000-149351000	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr4:149327200-149341200	Weak transcription	Psoas Muscle	Psoas
14	chr4:149327200-149341800	Weak transcription	Right Atrium	heart
15	chr4:149327400-149346600	Weak transcription	Small Intestine	intestine
16	chr4:149327800-149335200	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:149327800-149346400	Weak transcription	Gastric	stomach
18	chr4:149327800-149346400	Weak transcription	Pancreas	Pancrea
19	chr4:149328400-149335200	Weak transcription	Liver	Liver
20	chr4:149328600-149337600	Weak transcription	Stomach Mucosa	stomach
21	chr4:149329600-149343800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:149330400-149336000	Weak transcription	Adipose Nuclei	Adipose
23	chr4:149330600-149339000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr4:149332200-149336200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr4:149333400-149333800	Weak transcription	Left Ventricle	heart
26	chr4:149333400-149334600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:149333400-149339400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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