Variant report

Variant	rs72645698
Chromosome Location	chr4:149360126-149360127
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:149359682..149362369-chr4:149362404..149366011,4	K562	blood:
2	chr4:149359893..149361597-chr4:149362404..149366011,3	K562	blood:

Variant related genes	Relation type
ENSG00000151623	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519962	1.00[AMR][1000 genomes]
rs17024607	1.00[AMR][1000 genomes]
rs17024702	1.00[AMR][1000 genomes]
rs1858415	1.00[AMR][1000 genomes]
rs3910060	1.00[AMR][1000 genomes]
rs72655224	1.00[AMR][1000 genomes]
rs72656806	1.00[AMR][1000 genomes]
rs72656849	1.00[AMR][1000 genomes]
rs72656898	1.00[AMR][1000 genomes]
rs72658613	1.00[AMR][1000 genomes]
rs878232	1.00[AMR][1000 genomes]
rs907619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv822769	chr4:149359298-149369162	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149347600-149360600	Weak transcription	Aorta	Aorta
2	chr4:149355000-149361000	Weak transcription	Small Intestine	intestine
3	chr4:149355200-149361000	Weak transcription	NHLF	lung
4	chr4:149356400-149360600	Weak transcription	Colon Smooth Muscle	Colon
5	chr4:149356400-149362600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:149356600-149360800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:149356800-149362200	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:149357000-149360400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:149357200-149360600	Enhancers	Liver	Liver
10	chr4:149357400-149360200	Weak transcription	Adipose Nuclei	Adipose
11	chr4:149357400-149360400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:149357400-149360400	Weak transcription	Colonic Mucosa	Colon
13	chr4:149357400-149362400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:149357600-149360400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:149357600-149360400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:149357600-149360400	Weak transcription	Gastric	stomach
17	chr4:149357600-149360600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr4:149357600-149360600	Weak transcription	Ovary	ovary
19	chr4:149357600-149360800	Weak transcription	Brain Hippocampus Middle	brain
20	chr4:149357600-149361000	Weak transcription	Brain Angular Gyrus	brain
21	chr4:149357600-149361000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:149357600-149361000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr4:149357600-149361600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr4:149357600-149362600	Weak transcription	Fetal Stomach	stomach
25	chr4:149357600-149362800	Weak transcription	Lung	lung
26	chr4:149357600-149363000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:149357600-149363000	Weak transcription	Spleen	Spleen
28	chr4:149357800-149360400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:149357800-149360400	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr4:149357800-149360600	Weak transcription	Fetal Heart	heart
31	chr4:149357800-149360600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr4:149357800-149361000	Weak transcription	HUVEC	blood vessel
33	chr4:149357800-149361400	Weak transcription	Right Atrium	heart
34	chr4:149357800-149362200	Weak transcription	Fetal Muscle Leg	muscle
35	chr4:149357800-149362400	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:149357800-149362400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr4:149358000-149360400	Weak transcription	Psoas Muscle	Psoas
38	chr4:149358000-149360600	Weak transcription	Brain Anterior Caudate	brain
39	chr4:149358000-149360800	Weak transcription	Brain Substantia Nigra	brain
40	chr4:149358000-149361600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr4:149358000-149362400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr4:149358200-149362400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr4:149358600-149362200	Enhancers	Primary T helper cells PMA-I stimulated	--
44	chr4:149358800-149362200	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr4:149359200-149360400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:149359200-149362200	Enhancers	Stomach Mucosa	stomach
47	chr4:149359400-149360200	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr4:149359400-149360400	Weak transcription	Pancreas	Pancrea
49	chr4:149359400-149360600	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr4:149359600-149362200	Weak transcription	Left Ventricle	heart

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