Variant report

Variant	rs72655224
Chromosome Location	chr4:149172939-149172940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10519962	1.00[AMR][1000 genomes]
rs17024607	1.00[AMR][1000 genomes]
rs17024702	1.00[AMR][1000 genomes]
rs1858415	1.00[AMR][1000 genomes]
rs3910060	1.00[AMR][1000 genomes]
rs72645698	1.00[AMR][1000 genomes]
rs72656806	1.00[AMR][1000 genomes]
rs72656849	1.00[AMR][1000 genomes]
rs72656898	1.00[AMR][1000 genomes]
rs72658613	1.00[AMR][1000 genomes]
rs7689751	1.00[AMR][1000 genomes]
rs878232	1.00[AMR][1000 genomes]
rs907619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv880245	chr4:149132756-149183374	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1031815	chr4:149172485-149282928	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149160800-149179800	Weak transcription	Psoas Muscle	Psoas
2	chr4:149166600-149174400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr4:149169800-149175200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:149170400-149175400	Weak transcription	HUVEC	blood vessel
5	chr4:149171000-149183600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr4:149171200-149175200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:149171200-149178800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr4:149172000-149179400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr4:149172200-149173000	Weak transcription	Right Ventricle	heart
10	chr4:149172400-149173200	Enhancers	Pancreas	Pancrea
11	chr4:149172400-149174200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:149172400-149175200	Weak transcription	Ovary	ovary
13	chr4:149172600-149174200	Weak transcription	Left Ventricle	heart
14	chr4:149172600-149174200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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