Variant report

Variant	rs72658613
Chromosome Location	chr4:149317863-149317864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10519962	1.00[AMR][1000 genomes]
rs17024607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17024702	1.00[AMR][1000 genomes]
rs1858415	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3910060	1.00[AMR][1000 genomes]
rs72645698	1.00[AMR][1000 genomes]
rs72655224	1.00[AMR][1000 genomes]
rs72656806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72656849	1.00[AMR][1000 genomes]
rs72656898	1.00[AMR][1000 genomes]
rs878232	1.00[AMR][1000 genomes]
rs907619	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027263	chr4:149127120-149320135	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537296	chr4:149127120-149320135	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1016966	chr4:149209467-149341037	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv530433	chr4:149277637-149669181	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149297800-149350000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:149299000-149329000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr4:149299200-149318400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr4:149307200-149318200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:149307200-149318200	Weak transcription	Pancreas	Pancrea
6	chr4:149307400-149318200	Weak transcription	Ovary	ovary
7	chr4:149307600-149336600	Weak transcription	Aorta	Aorta
8	chr4:149309400-149320000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:149311800-149318200	Weak transcription	Stomach Mucosa	stomach
10	chr4:149312400-149318200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:149312800-149338800	Weak transcription	Brain Hippocampus Middle	brain
12	chr4:149313200-149326400	Weak transcription	Fetal Intestine Small	intestine
13	chr4:149313800-149318200	Weak transcription	Right Atrium	heart
14	chr4:149314800-149318200	Weak transcription	Psoas Muscle	Psoas
15	chr4:149315200-149318200	Weak transcription	Gastric	stomach
16	chr4:149315400-149318200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:149315400-149318200	Weak transcription	Left Ventricle	heart
18	chr4:149315400-149318200	Weak transcription	Lung	lung
19	chr4:149315400-149318800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr4:149315800-149318200	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:149315800-149318200	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr4:149315800-149326400	Weak transcription	Right Ventricle	heart
23	chr4:149316800-149320600	Enhancers	Fetal Heart	heart
24	chr4:149317200-149318200	Weak transcription	Small Intestine	intestine
25	chr4:149317200-149319200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr4:149317400-149318400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:149317800-149321400	Enhancers	Colon Smooth Muscle	Colon

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