Variant report

Variant	rs10521437
Chromosome Location	chr9:72675539-72675540
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10125454	0.85[ASN][1000 genomes]
rs17051515	0.92[EUR][1000 genomes]
rs17453310	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17454349	0.92[EUR][1000 genomes]
rs17454433	0.92[EUR][1000 genomes]
rs17526808	0.92[EUR][1000 genomes]
rs1887451	0.85[ASN][1000 genomes]
rs1927101	0.81[EUR][1000 genomes]
rs1927113	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2148863	0.85[ASN][1000 genomes]
rs5019539	0.81[EUR][1000 genomes]
rs6560015	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7024812	0.81[EUR][1000 genomes]
rs7853298	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv1049457	chr9:72539144-72765913	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv831613	chr9:72586058-72740061	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72667600-72688400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr9:72668800-72675800	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:72668800-72676600	Weak transcription	Gastric	stomach
4	chr9:72668800-72681400	Weak transcription	Esophagus	oesophagus
5	chr9:72669200-72682600	Weak transcription	Osteobl	bone
6	chr9:72670000-72688400	Weak transcription	NH-A	brain
7	chr9:72670600-72676000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:72671000-72675600	Enhancers	Stomach Smooth Muscle	stomach
9	chr9:72671200-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:72671600-72675600	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr9:72672000-72675600	Weak transcription	HSMM	muscle
12	chr9:72672000-72676000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:72672400-72675800	Weak transcription	Spleen	Spleen
14	chr9:72672400-72680200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:72672400-72681400	Weak transcription	Ovary	ovary
16	chr9:72672600-72676600	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr9:72673000-72675800	Enhancers	Colon Smooth Muscle	Colon
18	chr9:72674000-72680600	Weak transcription	Adipose Nuclei	Adipose
19	chr9:72674000-72682800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:72674000-72684400	Weak transcription	Fetal Stomach	stomach
21	chr9:72674200-72676800	Weak transcription	Right Atrium	heart
22	chr9:72674200-72679400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr9:72674400-72676000	Enhancers	HMEC	breast
24	chr9:72674600-72675600	Enhancers	NHEK	skin
25	chr9:72674600-72675800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:72674600-72677600	Genic enhancers	HSMMtube	muscle
27	chr9:72674800-72675800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:72674800-72676600	Enhancers	H1 Cell Line	embryonic stem cell
29	chr9:72674800-72676600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr9:72675000-72676400	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr9:72675000-72676800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:72675000-72677600	Enhancers	NHDF-Ad	bronchial
33	chr9:72675000-72680600	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:72675200-72675600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:72675200-72676400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr9:72675200-72676400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr9:72675400-72676200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr9:72675400-72676400	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr9:72675400-72676800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr9:72675400-72677000	Enhancers	H9 Cell Line	embryonic stem cell

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