Variant report

Variant	rs1055460
Chromosome Location	chr6:37180136-37180137
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1055461	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755738	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12205385	0.90[ASN][1000 genomes]
rs4714048	1.00[JPT][hapmap]
rs55697306	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55866815	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6912670	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7759976	0.90[ASN][1000 genomes]
rs9462284	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470535	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470536	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9470540	1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1055460	ENSG00000172738	cis	multi-tissue	Pritchard

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
3	chr6:37178200-37184200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:37178600-37180800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr6:37179000-37185600	Weak transcription	Dnd41	blood
6	chr6:37179600-37180200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr6:37179800-37180200	Bivalent Enhancer	HepG2	liver
8	chr6:37180000-37180200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:37180000-37180200	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr6:37180000-37180600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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