Variant report

Variant	rs55866815
Chromosome Location	chr6:37176292-37176293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36997224..37001862-chr6:37173680..37176936,6	K562	blood:
2	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
3	chr6:36990791..36991393-chr6:37175987..37176512,2	K562	blood:
4	chr6:37145223..37146087-chr6:37175760..37176311,2	K562	blood:
5	chr6:37137029..37138743-chr6:37176184..37178998,2	K562	blood:
6	chr6:37176193..37179030-chr6:37187098..37189200,2	K562	blood:
7	chr6:37138941..37142490-chr6:37173522..37176911,4	K562	blood:
8	chr6:37018979..37019899-chr6:37175550..37176433,4	K562	blood:
9	chr6:37176282..37178412-chr6:37181921..37184368,2	K562	blood:
10	chr6:36989137..36990101-chr6:37175465..37176865,5	MCF-7	breast:
11	chr6:36985701..36987115-chr6:37175477..37176997,13	K562	blood:
12	chr6:37047930..37050667-chr6:37174268..37176319,2	K562	blood:
13	chr6:36989137..36990111-chr6:37175487..37176467,5	K562	blood:
14	chr6:36996603..36998184-chr6:37175452..37176492,5	K562	blood:
15	chr6:37015294..37018707-chr6:37173927..37177925,4	K562	blood:
16	chr6:37003888..37004611-chr6:37175897..37176473,2	MCF-7	breast:
17	chr6:36985689..36987067-chr6:37174835..37176439,10	MCF-7	breast:
18	chr6:37138215..37139821-chr6:37175496..37177561,2	MCF-7	breast:
19	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
20	chr6:36986111..36987939-chr6:37176127..37178450,2	MCF-7	breast:
21	chr6:37019030..37019973-chr6:37175557..37176474,5	MCF-7	breast:
22	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
23	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:
24	chr6:36997142..36997695-chr6:37176051..37176673,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1055460	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1055461	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755738	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205385	0.84[ASN][1000 genomes]
rs55697306	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912670	0.80[ASN][1000 genomes]
rs7759976	0.84[ASN][1000 genomes]
rs9462284	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470535	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470536	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470540	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:37171000-37177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
6	chr6:37172400-37177800	Weak transcription	Fetal Heart	heart
7	chr6:37172400-37177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
10	chr6:37173200-37176400	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr6:37173600-37178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:37173600-37178000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:37173600-37178200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:37173600-37178200	Weak transcription	A549	lung
15	chr6:37173800-37176400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:37174600-37177600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr6:37174600-37177600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:37174600-37178400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:37174800-37178400	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:37175000-37178600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr6:37175200-37178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr6:37175200-37178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr6:37175400-37178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr6:37175400-37178600	Enhancers	Primary T cells from cord blood	blood
26	chr6:37176000-37178000	Weak transcription	Placenta	Placenta
27	chr6:37176000-37178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:37176200-37177200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:37176200-37177400	Weak transcription	Primary B cells from peripheral blood	blood
31	chr6:37176200-37177400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr6:37176200-37178000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:37176200-37178000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:37176200-37178000	Weak transcription	Pancreas	Pancrea
35	chr6:37176200-37178200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:37176200-37178800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
37	chr6:37176200-37179000	Enhancers	Dnd41	blood
38	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr6:37176200-37180000	Enhancers	K562	blood
40	chr6:37176200-37189800	Weak transcription	Thymus	Thymus

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