Variant report

Variant	rs9470535
Chromosome Location	chr6:37172142-37172143
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37142590..37145563-chr6:37170274..37176000,5	K562	blood:
2	chr6:36990423..36992455-chr6:37172095..37173787,2	K562	blood:
3	chr6:36987477..36989707-chr6:37172018..37174829,3	K562	blood:
4	chr6:37135932..37139424-chr6:37171946..37173659,3	MCF-7	breast:
5	chr6:36994882..36997738-chr6:37171997..37173626,2	K562	blood:
6	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
7	chr6:36953404..36955776-chr6:37170589..37172526,2	MCF-7	breast:
8	chr6:37022772..37024698-chr6:37171655..37174506,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000137409	Chromatin interaction
ENSG00000146192	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1055460	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1055461	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11755738	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205385	0.84[ASN][1000 genomes]
rs17570917	0.80[YRI][hapmap]
rs4714048	1.00[JPT][hapmap]
rs55697306	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55866815	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6912670	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs7759976	0.84[ASN][1000 genomes]
rs9462284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470540	1.00[JPT][hapmap];0.84[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37167400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:37167600-37173600	Enhancers	Fetal Intestine Small	intestine
4	chr6:37168000-37173800	Enhancers	HepG2	liver
5	chr6:37169200-37172600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr6:37169200-37174000	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr6:37169400-37173200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr6:37169400-37173400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:37169400-37173400	Enhancers	Duodenum Mucosa	Duodenum
10	chr6:37169400-37174200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr6:37169400-37174200	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr6:37169600-37172200	Enhancers	Primary T cells from cord blood	blood
13	chr6:37169600-37176200	Enhancers	Primary hematopoietic stem cells	blood
14	chr6:37169800-37173800	Enhancers	Fetal Intestine Large	intestine
15	chr6:37170000-37172400	Enhancers	Stomach Mucosa	stomach
16	chr6:37170000-37173000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:37170200-37172800	Enhancers	Dnd41	blood
19	chr6:37170600-37173600	Enhancers	Hela-S3	cervix
20	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:37171000-37173600	Enhancers	Sigmoid Colon	Sigmoid Colon
22	chr6:37171000-37175400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr6:37171000-37175600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:37171000-37177400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:37171200-37172400	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr6:37171200-37175200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:37171400-37173000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr6:37171400-37173000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr6:37171600-37172400	Enhancers	Fetal Heart	heart
30	chr6:37171600-37173000	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:37171600-37173200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr6:37171600-37175400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr6:37171800-37172200	Active TSS	Fetal Kidney	kidney
34	chr6:37171800-37172200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr6:37171800-37172200	Genic enhancers	K562	blood
36	chr6:37171800-37172600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:37171800-37173400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr6:37171800-37173600	Enhancers	A549	lung
39	chr6:37172000-37172200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:37172000-37172200	Enhancers	Colonic Mucosa	Colon
41	chr6:37172000-37172400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:37172000-37172400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:37172000-37172400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr6:37172000-37172400	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr6:37172000-37172400	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:37172000-37172400	Enhancers	HMEC	breast
47	chr6:37172000-37172400	Enhancers	NHEK	skin
48	chr6:37172000-37173000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus

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