Variant report

Variant	rs9470540
Chromosome Location	chr6:37177783-37177784
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:21)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:21 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:36985644..36987482-chr6:37177455..37178899,11	MCF-7	breast:
2	chr6:36984139..36992310-chr6:37174438..37180666,13	K562	blood:
3	chr6:36950922..36953739-chr6:37176914..37178749,2	MCF-7	breast:
4	chr6:37176912..37179882-chr6:37181319..37183621,3	K562	blood:
5	chr6:37177179..37179979-chr6:37232016..37233735,2	K562	blood:
6	chr6:37137029..37138743-chr6:37176184..37178998,2	K562	blood:
7	chr6:37176193..37179030-chr6:37187098..37189200,2	K562	blood:
8	chr6:37139726..37140636-chr6:37177279..37178166,2	K562	blood:
9	chr6:37176282..37178412-chr6:37181921..37184368,2	K562	blood:
10	chr6:36985027..36989561-chr6:37176409..37180028,4	K562	blood:
11	chr6:36985713..36987315-chr6:37177177..37178923,41	K562	blood:
12	chr6:37013870..37015884-chr6:37176844..37178399,2	K562	blood:
13	chr6:36989160..36990097-chr6:37177684..37178889,6	MCF-7	breast:
14	chr6:37001172..37003656-chr6:37177575..37179330,2	K562	blood:
15	chr6:37015294..37018707-chr6:37173927..37177925,4	K562	blood:
16	chr6:37151215..37153686-chr6:37176476..37178386,2	K562	blood:
17	chr6:37149356..37151039-chr6:37177346..37179658,2	K562	blood:
18	chr6:37143067..37148225-chr6:37171800..37179920,10	K562	blood:
19	chr6:36986111..36987939-chr6:37176127..37178450,2	MCF-7	breast:
20	chr6:37136338..37142901-chr6:37174353..37180910,16	K562	blood:
21	chr6:36995372..37000472-chr6:37174362..37180086,7	K562	blood:

No data

Variant related genes	Relation type
ENSG00000146192	Chromatin interaction
ENSG00000252687	Chromatin interaction
ENSG00000137193	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1055460	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1055461	0.93[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11755738	0.84[ASN][1000 genomes]
rs12205385	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12209150	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs262950	0.90[EUR][1000 genomes]
rs4714048	0.95[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs55697306	0.84[ASN][1000 genomes]
rs55761393	0.85[EUR][1000 genomes]
rs55866815	0.84[ASN][1000 genomes]
rs6912670	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7759976	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9462284	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9470535	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs9470536	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527191	chr6:37173793-37180523	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9470540	ANKS1A	cis	cerebellum	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37167200-37179200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:37170000-37178000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr6:37170800-37178000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:37172000-37179000	Enhancers	Fetal Thymus	thymus
5	chr6:37172400-37177800	Weak transcription	Fetal Heart	heart
6	chr6:37172400-37177800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:37173000-37178400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:37173000-37179000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr6:37173600-37178000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:37173600-37178000	Weak transcription	Fetal Intestine Small	intestine
11	chr6:37173600-37178200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:37173600-37178200	Weak transcription	A549	lung
13	chr6:37173800-37178800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:37174600-37178400	Enhancers	Primary T helper naive cells from peripheral blood	blood
15	chr6:37174800-37178400	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr6:37175000-37178600	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr6:37175200-37178600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr6:37175200-37178800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:37175400-37178400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr6:37175400-37178600	Enhancers	Primary T cells from cord blood	blood
21	chr6:37176000-37178000	Weak transcription	Placenta	Placenta
22	chr6:37176000-37178400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
23	chr6:37176000-37182600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:37176200-37178000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr6:37176200-37178000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:37176200-37178000	Weak transcription	Pancreas	Pancrea
27	chr6:37176200-37178200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr6:37176200-37178800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr6:37176200-37179000	Enhancers	Dnd41	blood
30	chr6:37176200-37179800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr6:37176200-37180000	Enhancers	K562	blood
32	chr6:37176200-37189800	Weak transcription	Thymus	Thymus
33	chr6:37176400-37177800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:37176400-37178000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr6:37177200-37178600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr6:37177400-37178400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr6:37177600-37178000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
38	chr6:37177600-37178000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
39	chr6:37177600-37178200	Weak transcription	Primary hematopoietic stem cells	blood

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