Variant report

Variant	rs10735560
Chromosome Location	chr9:72323767-72323768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118222	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10119846	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10217776	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746706	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746707	0.82[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780585	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780610	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867922	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868056	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11139996	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330238	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330240	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1330332	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411410	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411413	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1536992	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1536994	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1547690	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1576482	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576483	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1980934	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2026794	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2150045	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2252130	0.92[ASN][1000 genomes]
rs2274745	0.96[ASN][1000 genomes]
rs2309531	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535802	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4535803	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023462	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7037769	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7039383	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7851707	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867543	0.95[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72313000-72333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72319400-72330400	Weak transcription	Left Ventricle	heart
3	chr9:72319400-72336600	Weak transcription	NHDF-Ad	bronchial
4	chr9:72319800-72324000	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr9:72320000-72324800	Weak transcription	Primary B cells from cord blood	blood
6	chr9:72320400-72332800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr9:72320600-72323800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr9:72320600-72330200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr9:72320800-72330600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:72320800-72332600	Weak transcription	NH-A	brain
11	chr9:72321000-72324000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:72321000-72327600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr9:72321000-72328000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:72321000-72331600	Weak transcription	Brain Hippocampus Middle	brain
15	chr9:72321400-72332400	Weak transcription	HMEC	breast
16	chr9:72321400-72332600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:72321400-72333200	Weak transcription	Brain Substantia Nigra	brain
18	chr9:72321600-72326600	Weak transcription	Osteobl	bone
19	chr9:72321600-72327000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr9:72321600-72327400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:72321600-72330600	Weak transcription	Hela-S3	cervix
22	chr9:72321600-72331400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:72321600-72332600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr9:72321600-72332600	Weak transcription	Placenta	Placenta
25	chr9:72321600-72334400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr9:72321600-72335400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr9:72321800-72327200	Weak transcription	Adipose Nuclei	Adipose
28	chr9:72321800-72327600	Weak transcription	HUVEC	blood vessel
29	chr9:72321800-72333200	Weak transcription	NHLF	lung
30	chr9:72322000-72323800	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr9:72322000-72324200	Weak transcription	Dnd41	blood
32	chr9:72322000-72324600	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr9:72322000-72327200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr9:72322000-72327200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:72322000-72328600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr9:72322000-72333000	Weak transcription	Thymus	Thymus
37	chr9:72322200-72324800	Weak transcription	Liver	Liver
38	chr9:72322200-72325400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:72322200-72327200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr9:72322200-72329400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr9:72322200-72332600	Weak transcription	Pancreas	Pancrea
42	chr9:72322200-72332600	Weak transcription	Spleen	Spleen
43	chr9:72322200-72338000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr9:72322400-72327400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr9:72322400-72329400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr9:72322600-72324200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr9:72322600-72327000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:72322600-72328400	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr9:72322600-72332600	Weak transcription	Fetal Stomach	stomach
50	chr9:72322600-72333200	Weak transcription	A549	lung

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