Variant report

Variant	rs1536994
Chromosome Location	chr9:72379547-72379548
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72375078..72376578-chr9:72378308..72381037,2	K562	blood:
2	chr9:72369892..72372039-chr9:72377603..72379852,2	MCF-7	breast:
3	chr9:72375017..72376522-chr9:72378625..72381142,2	MCF-7	breast:
4	chr9:72371967..72374601-chr9:72378093..72381020,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118222	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10119846	0.82[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10217776	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10735560	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10746706	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10746707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10780585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10780610	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10867922	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10868056	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11139996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330332	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1411410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1411413	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1536992	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1547690	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1576482	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1576483	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1980934	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2026794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2150045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2252130	0.91[ASN][1000 genomes]
rs2274745	0.94[ASN][1000 genomes]
rs2309531	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535802	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4535803	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7023462	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7037769	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7039383	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7851707	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7867543	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72375600-72383000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr9:72375600-72383200	Weak transcription	HSMMtube	muscle
3	chr9:72377200-72383400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:72377800-72383000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:72378000-72379600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:72378000-72382400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:72378000-72382800	Weak transcription	Osteobl	bone
8	chr9:72378000-72383200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr9:72378000-72383200	Weak transcription	NHDF-Ad	bronchial
10	chr9:72378200-72380400	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr9:72378200-72382200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:72378800-72379600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:72379000-72380000	Enhancers	A549	lung
14	chr9:72379000-72380200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr9:72379000-72380200	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr9:72379000-72380400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:72379200-72380000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr9:72379200-72380400	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:72379200-72380400	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr9:72379400-72380600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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