Variant report

Variant	rs1411410
Chromosome Location	chr9:72331806-72331807
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:72326559..72328464-chr9:72330242..72332864,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118222	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10119846	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10217776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10735560	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746706	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10780610	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10867922	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10868056	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11139996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1330240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1330332	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1411413	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1536992	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1536994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1547690	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1576482	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1576483	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1980934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2026794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2150045	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2252130	0.92[ASN][1000 genomes]
rs2274745	0.96[ASN][1000 genomes]
rs2309531	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4535802	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4535803	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7023462	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7037769	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7039383	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7851707	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7867543	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72313000-72333200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:72319400-72336600	Weak transcription	NHDF-Ad	bronchial
3	chr9:72320400-72332800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:72320800-72332600	Weak transcription	NH-A	brain
5	chr9:72321400-72332400	Weak transcription	HMEC	breast
6	chr9:72321400-72332600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:72321400-72333200	Weak transcription	Brain Substantia Nigra	brain
8	chr9:72321600-72332600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:72321600-72332600	Weak transcription	Placenta	Placenta
10	chr9:72321600-72334400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr9:72321600-72335400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr9:72321800-72333200	Weak transcription	NHLF	lung
13	chr9:72322000-72333000	Weak transcription	Thymus	Thymus
14	chr9:72322200-72332600	Weak transcription	Pancreas	Pancrea
15	chr9:72322200-72332600	Weak transcription	Spleen	Spleen
16	chr9:72322200-72338000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr9:72322600-72332600	Weak transcription	Fetal Stomach	stomach
18	chr9:72322600-72333200	Weak transcription	A549	lung
19	chr9:72322800-72333200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr9:72323000-72332600	Weak transcription	Esophagus	oesophagus
21	chr9:72323000-72332600	Weak transcription	GM12878-XiMat	blood
22	chr9:72323200-72332600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr9:72323200-72338000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr9:72323600-72344400	Weak transcription	NHEK	skin
25	chr9:72323600-72360800	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr9:72323800-72357600	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr9:72324000-72332800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr9:72324000-72335000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr9:72324200-72333200	Weak transcription	HSMM	muscle
30	chr9:72324200-72361000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:72324600-72335400	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr9:72324600-72359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:72324800-72333200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr9:72324800-72345200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:72325000-72340400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:72325000-72358800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr9:72325400-72337800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr9:72325400-72346200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr9:72325600-72332600	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:72326000-72333200	Weak transcription	HSMMtube	muscle
41	chr9:72326000-72333800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:72326000-72339800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
43	chr9:72326000-72345000	Weak transcription	Rectal Smooth Muscle	rectum
44	chr9:72326600-72332600	Weak transcription	Ovary	ovary
45	chr9:72326600-72344600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
46	chr9:72326600-72346400	Weak transcription	Small Intestine	intestine
47	chr9:72327000-72332600	Weak transcription	Fetal Muscle Trunk	muscle
48	chr9:72327000-72333800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:72327200-72336400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr9:72327400-72332800	Weak transcription	Fetal Brain Female	brain

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