Variant report

Variant	rs2150045
Chromosome Location	chr9:72372829-72372830
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72364587..72367878-chr9:72369030..72373518,3	MCF-7	breast:
2	chr9:72371606..72373829-chr9:72533135..72535747,2	MCF-7	breast:
3	chr9:72360551..72362642-chr9:72371189..72374048,2	K562	blood:
4	chr9:72371967..72374601-chr9:72378093..72381020,2	K562	blood:
5	chr9:72260891..72262906-chr9:72372522..72374744,2	MCF-7	breast:
6	chr9:72369991..72372114-chr9:72372371..72373981,2	K562	blood:
7	chr9:72366292..72369666-chr9:72369993..72373484,7	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118222	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119846	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217776	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735560	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746706	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746707	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780585	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867922	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868056	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139996	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330240	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330332	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411410	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411413	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1536992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1536994	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1547690	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1576482	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1576483	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252130	0.96[ASN][1000 genomes]
rs2274745	1.00[ASN][1000 genomes]
rs2309531	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535802	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535803	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023462	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7037769	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7039383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851707	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7867543	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72333400-72374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:72347200-72373400	Weak transcription	Esophagus	oesophagus
3	chr9:72347200-72373400	Weak transcription	Fetal Intestine Small	intestine
4	chr9:72347200-72374200	Weak transcription	Spleen	Spleen
5	chr9:72347400-72374000	Weak transcription	Gastric	stomach
6	chr9:72348800-72373000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr9:72348800-72373000	Weak transcription	NHEK	skin
8	chr9:72348800-72373200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr9:72359800-72373400	Weak transcription	Placenta	Placenta
10	chr9:72362400-72373000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:72362400-72373400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr9:72362600-72373200	Weak transcription	Fetal Stomach	stomach
13	chr9:72362800-72373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr9:72362800-72373400	Weak transcription	Aorta	Aorta
15	chr9:72363000-72373400	Weak transcription	Ovary	ovary
16	chr9:72363200-72373200	Weak transcription	Right Ventricle	heart
17	chr9:72363200-72374000	Weak transcription	Lung	lung
18	chr9:72364000-72373000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr9:72364200-72373200	Weak transcription	HSMMtube	muscle
20	chr9:72364200-72373400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:72364400-72373000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:72365200-72373200	Weak transcription	Colonic Mucosa	Colon
23	chr9:72365400-72373400	Weak transcription	Duodenum Mucosa	Duodenum
24	chr9:72365400-72373800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr9:72365600-72373000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr9:72365600-72373000	Weak transcription	Fetal Thymus	thymus
27	chr9:72365600-72373200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:72365600-72373200	Weak transcription	Fetal Intestine Large	intestine
29	chr9:72365600-72373400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr9:72365800-72373000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:72365800-72373000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:72365800-72373400	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:72365800-72373400	Weak transcription	Left Ventricle	heart
34	chr9:72365800-72373800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr9:72366000-72373200	Weak transcription	Primary monocytes fromperipheralblood	blood
36	chr9:72366000-72373200	Weak transcription	Primary hematopoietic stem cells	blood
37	chr9:72366200-72373200	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr9:72366400-72373000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr9:72367400-72373400	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr9:72367400-72374000	Weak transcription	Stomach Mucosa	stomach
41	chr9:72368800-72373200	Weak transcription	Brain Hippocampus Middle	brain
42	chr9:72369000-72373000	Weak transcription	Brain Substantia Nigra	brain
43	chr9:72369200-72373400	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr9:72370200-72373400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr9:72370400-72373200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr9:72370400-72373400	Weak transcription	Primary B cells from peripheral blood	blood
47	chr9:72370400-72373400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr9:72370600-72373200	Weak transcription	Brain Angular Gyrus	brain
49	chr9:72371000-72373400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr9:72371200-72373200	Enhancers	Thymus	Thymus

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