Variant report

Variant	rs7039383
Chromosome Location	chr9:72355600-72355601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10118222	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119846	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10217776	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735560	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10746706	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10746707	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780585	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780610	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10867922	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10868056	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11139996	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330238	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1330240	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1330332	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1411410	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411413	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1536992	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1536994	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1547690	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1576482	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1576483	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1980934	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2026794	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2150045	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2252130	0.96[ASN][1000 genomes]
rs2274745	1.00[ASN][1000 genomes]
rs2309531	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535802	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4535803	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7023462	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7037769	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7851707	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7867543	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471309	chr9:72273898-72410323	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1048622	chr9:72303617-72371795	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:129 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72323600-72360800	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:72323800-72357600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:72324200-72361000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:72324600-72359800	Strong transcription	HUES48 Cell Line	embryonic stem cell
5	chr9:72325000-72358800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr9:72327800-72366800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:72330600-72357400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:72333400-72374000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr9:72336600-72359400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr9:72337400-72366400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:72342200-72356600	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr9:72342200-72356600	Strong transcription	Fetal Thymus	thymus
13	chr9:72342200-72356800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr9:72345400-72359000	Weak transcription	Pancreas	Pancrea
15	chr9:72346600-72360000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr9:72347000-72364600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr9:72347200-72358800	Weak transcription	Fetal Heart	heart
18	chr9:72347200-72360600	Weak transcription	Brain Substantia Nigra	brain
19	chr9:72347200-72361600	Weak transcription	Ovary	ovary
20	chr9:72347200-72364800	Weak transcription	Fetal Brain Female	brain
21	chr9:72347200-72371400	Weak transcription	Small Intestine	intestine
22	chr9:72347200-72373400	Weak transcription	Esophagus	oesophagus
23	chr9:72347200-72373400	Weak transcription	Fetal Intestine Small	intestine
24	chr9:72347200-72374200	Weak transcription	Spleen	Spleen
25	chr9:72347400-72361800	Weak transcription	Brain Germinal Matrix	brain
26	chr9:72347400-72362200	Weak transcription	Aorta	Aorta
27	chr9:72347400-72374000	Weak transcription	Gastric	stomach
28	chr9:72347600-72362200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:72347600-72362600	Weak transcription	Right Ventricle	heart
30	chr9:72347600-72368400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr9:72348200-72361800	Weak transcription	Fetal Brain Male	brain
32	chr9:72348400-72363800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr9:72348600-72364000	Weak transcription	Colonic Mucosa	Colon
34	chr9:72348800-72358800	Weak transcription	HepG2	liver
35	chr9:72348800-72359000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:72348800-72359800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:72348800-72362000	Weak transcription	Fetal Muscle Leg	muscle
38	chr9:72348800-72362200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr9:72348800-72362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr9:72348800-72362400	Weak transcription	Lung	lung
41	chr9:72348800-72368600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr9:72348800-72373000	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:72348800-72373000	Weak transcription	NHEK	skin
44	chr9:72348800-72373200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr9:72349000-72355800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr9:72349000-72359000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr9:72349000-72359800	Weak transcription	K562	blood
48	chr9:72349000-72360400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr9:72349000-72360400	Weak transcription	Brain Anterior Caudate	brain
50	chr9:72349000-72360400	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links