Variant report

Variant	rs10747272
Chromosome Location	chr6:145574527-145574528
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10080573	0.91[EUR][1000 genomes]
rs11155407	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11966141	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12192050	0.88[EUR][1000 genomes]
rs12197362	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198549	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12212061	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321527	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1321528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1474614	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1546865	0.91[EUR][1000 genomes]
rs1546866	0.91[EUR][1000 genomes]
rs2328651	0.82[EUR][1000 genomes]
rs2328652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2876615	0.82[EUR][1000 genomes]
rs4895668	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4896789	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs491794	0.81[AMR][1000 genomes]
rs562811	0.81[AMR][1000 genomes]
rs6899332	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6917361	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6917689	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6919820	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6924190	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6932885	0.87[EUR][1000 genomes]
rs6942333	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs715030	0.87[EUR][1000 genomes]
rs715031	0.87[EUR][1000 genomes]
rs737436	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755038	0.91[EUR][1000 genomes]
rs9484958	0.87[EUR][1000 genomes]
rs9484959	0.87[EUR][1000 genomes]
rs9484961	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145572200-145575000	Weak transcription	HepG2	liver
2	chr6:145574000-145574600	Enhancers	Hela-S3	cervix
3	chr6:145574400-145575800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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