Variant report

Variant	rs715030
Chromosome Location	chr6:145554518-145554519
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:145547168..145549367-chr6:145552158..145554924,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10080573	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10747272	0.87[EUR][1000 genomes]
rs11155407	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11966141	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12192050	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12197362	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198549	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12212061	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1321528	0.87[EUR][1000 genomes]
rs1474614	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1546864	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1546865	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1546866	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17074868	0.88[ASN][1000 genomes]
rs1884955	0.88[ASN][1000 genomes]
rs2328651	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2328652	0.87[EUR][1000 genomes]
rs2876615	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs491131	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs507942	0.85[ASN][1000 genomes]
rs6899332	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917361	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6917689	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6924190	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6932885	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6933246	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs6942333	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs715031	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs737436	0.87[EUR][1000 genomes]
rs7744166	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7755038	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9484958	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484959	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484961	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9497203	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145553600-145557600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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