Variant report

Variant	rs12197362
Chromosome Location	chr6:145584354-145584355
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10080573	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10747272	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11155407	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966141	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12192050	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12198531	0.81[AFR][1000 genomes]
rs12198549	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12212061	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1321528	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1474614	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1546864	0.87[ASN][1000 genomes]
rs1546865	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1546866	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2328651	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2328652	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2876615	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs491794	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs507942	0.96[ASN][1000 genomes]
rs513966	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs546717	0.82[ASN][1000 genomes]
rs553160	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs559366	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs562811	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs6899332	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6917361	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6917689	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6924190	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6932885	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6933246	0.86[ASN][1000 genomes]
rs6942333	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs715030	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs715031	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs737436	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7744166	0.86[ASN][1000 genomes]
rs7755038	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9484958	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9484959	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9484961	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145579400-145593600	Weak transcription	Fetal Kidney	kidney
2	chr6:145582200-145585000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:145582800-145586400	Enhancers	Fetal Lung	lung
4	chr6:145583000-145584800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr6:145584000-145586800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:145584200-145586800	Weak transcription	Fetal Intestine Large	intestine
7	chr6:145584200-145587000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:145584200-145593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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