Variant report

Variant	rs507942
Chromosome Location	chr6:145580997-145580998
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10080573	0.87[ASN][1000 genomes]
rs11155407	0.96[ASN][1000 genomes]
rs11966141	0.88[ASN][1000 genomes]
rs12192050	0.85[ASN][1000 genomes]
rs12197362	0.96[ASN][1000 genomes]
rs12198549	0.87[ASN][1000 genomes]
rs12212061	0.87[ASN][1000 genomes]
rs1474614	0.88[ASN][1000 genomes]
rs1546864	0.86[ASN][1000 genomes]
rs1546865	0.87[ASN][1000 genomes]
rs1546866	0.87[ASN][1000 genomes]
rs2328651	0.84[ASN][1000 genomes]
rs2876615	0.84[ASN][1000 genomes]
rs491131	0.83[EUR][1000 genomes]
rs491794	0.87[ASN][1000 genomes]
rs513966	0.82[ASN][1000 genomes]
rs553160	0.82[ASN][1000 genomes]
rs562811	0.88[ASN][1000 genomes]
rs6899332	0.86[ASN][1000 genomes]
rs6917361	0.87[ASN][1000 genomes]
rs6917689	0.88[ASN][1000 genomes]
rs6924190	0.88[ASN][1000 genomes]
rs6932885	0.85[ASN][1000 genomes]
rs6933246	0.85[ASN][1000 genomes]
rs6942333	0.88[ASN][1000 genomes]
rs715030	0.85[ASN][1000 genomes]
rs715031	0.85[ASN][1000 genomes]
rs7744166	0.85[ASN][1000 genomes]
rs7755038	0.87[ASN][1000 genomes]
rs9484958	0.85[ASN][1000 genomes]
rs9484959	0.85[ASN][1000 genomes]
rs9484961	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs507942	PLAGL1	cis	cerebellum	SCAN
rs507942	UST	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145579400-145593600	Weak transcription	Fetal Kidney	kidney
2	chr6:145580600-145582400	Enhancers	Fetal Lung	lung
3	chr6:145580800-145581000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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