Variant report

Variant	rs491131
Chromosome Location	chr6:145534850-145534851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10080573	0.82[ASN][1000 genomes]
rs1033425	0.85[ASN][1000 genomes]
rs11155407	0.80[ASN][1000 genomes]
rs11966141	0.82[ASN][1000 genomes]
rs12192050	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12198531	0.87[ASN][1000 genomes]
rs12198549	0.80[ASN][1000 genomes]
rs12212061	0.80[ASN][1000 genomes]
rs1474614	0.82[ASN][1000 genomes]
rs1546864	0.81[ASN][1000 genomes]
rs1546865	0.82[ASN][1000 genomes]
rs1546866	0.82[ASN][1000 genomes]
rs17074868	1.00[ASN][1000 genomes]
rs1884955	1.00[ASN][1000 genomes]
rs2328651	0.86[ASN][1000 genomes]
rs2876615	0.86[ASN][1000 genomes]
rs507942	0.83[EUR][1000 genomes]
rs6899332	0.81[ASN][1000 genomes]
rs6917361	0.80[ASN][1000 genomes]
rs6917689	0.82[ASN][1000 genomes]
rs6932885	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6933246	0.88[ASN][1000 genomes]
rs6942333	0.82[ASN][1000 genomes]
rs715030	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs715031	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7744166	0.88[ASN][1000 genomes]
rs7755038	0.82[ASN][1000 genomes]
rs9484958	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9484959	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9484961	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016747	chr6:144917411-145599874	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1022965	chr6:145374851-145635385	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv830834	chr6:145392073-145556294	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv886745	chr6:145494486-145554124	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs491131	UST	cis	parietal	SCAN
rs491131	PLAGL1	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:145528400-145535800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:145528600-145535800	Weak transcription	Osteobl	bone
3	chr6:145532200-145535400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr6:145534000-145535000	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:145534200-145535000	Enhancers	Fetal Kidney	kidney
6	chr6:145534200-145535600	Enhancers	Colon Smooth Muscle	Colon
7	chr6:145534400-145535600	Flanking Active TSS	GM12878-XiMat	blood
8	chr6:145534600-145535600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:145534800-145535800	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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